Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs74942150 | chr7:20643839 | A/C | 1.81E-6 | 178 | 15.53 | 15.57 | 3.67 | KM Plot |
| PAAD | rs74977188 | chr1:200520256 | A/G | 0 | 170 | 14.9 | 16.17 | 1.03 | KM Plot |
| PAAD | rs74978094 | chr1:227502659 | A/C | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs74989588 | chr7:20656250 | C/G | 1.81E-6 | 178 | 15.53 | 15.57 | 3.67 | KM Plot |
| PAAD | rs750156 | chr2:70486407 | A/G | 0 | 178 | 15.33 | 18.43 | 1.03 | KM Plot |
| PAAD | rs75053784 | chr1:227443324 | C/T | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs75085172 | chr1:227513630 | T/C | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs7516754 | chr1:16311231 | T/C | 2.03E-6 | 176 | 3.43 | 14 | 15.62 | KM Plot |
| PAAD | rs75177485 | chr11:125697442 | C/A | 6.44E-5 | 177 | 15.95 | 11.6 | 4.1 | KM Plot |
| PAAD | rs75213165 | chr1:227280520 | T/C | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs75235833 | chr2:70508041 | C/CA | 0 | 177 | 15.37 | 17.32 | 1.03 | KM Plot |
| PAAD | rs75236700 | chr12:53276938 | A/G | 0 | 176 | 15.62 | 13.47 | 1.03 | KM Plot |
| PAAD | rs7524967 | chr1:227370823 | G/C | 3.69E-5 | 177 | 15.53 | 15.43 | 3.9 | KM Plot |
| PAAD | rs75261338 | chr1:227510379 | A/C | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs7527422 | chr1:89855475 | G/A | 0.000149 | 174 | 4.1 | 13.1 | 15.67 | KM Plot |